JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYSTM1_chr5_140170188_140248789	0/0	t0005	497	1	1	0	0	0	0	copy fasta	CYSTM1	chr5	140170188	140248789
CYSTM1_chr5_140170188_140248789	0/0	t0006	497	1	0	0	0	0	1	copy fasta	CYSTM1	chr5	140170188	140248789
CYTH1_chr17_78669048_78787273	1/0	t0001	2094	90	30	13	39	2	5	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0002	2093	77	2	12	54	1	8	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0003	2093	55	22	2	31	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0004	2094	44	3	10	19	1	11	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0005	2093	28	1	0	20	0	7	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0006	2093	23	1	7	7	4	4	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/1	t0007	2094	11	3	6	0	1	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0008	2093	9	0	6	0	3	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0009	2093	8	8	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0010	2093	4	4	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0011	2094	3	0	0	3	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0012	2093	2	1	1	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0013	2093	2	2	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0014	2093	2	2	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0015	2094	2	1	0	1	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0016	2094	2	2	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0017	2093	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0018	2093	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0019	2093	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0020	2093	1	0	0	1	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0021	2093	1	0	0	1	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0022	2094	1	0	1	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0023	2094	1	0	1	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0024	2094	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0025	2094	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0026	2094	1	0	0	0	0	1	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0027	2094	1	0	0	1	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0028	2094	1	0	0	1	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0029	2094	1	1	0	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0030	2094	1	0	0	0	0	1	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0031	2093	1	0	1	0	0	0	copy fasta	CYTH1	chr17	78669048	78787273
CYTH1_chr17_78669048_78787273	0/0	t0032	2093	1	0	0	0	0	1	copy fasta	CYTH1	chr17	78669048	78787273
CYTH2_chr19_48464369_48487314	0/0	t0001	3245	129	38	26	48	2	15	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	1/0	t0002	3244	86	3	9	63	2	8	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/1	t0003	3245	43	3	18	9	3	9	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0004	3244	14	7	0	6	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0005	3244	7	4	3	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0006	3128	6	1	4	0	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0007	3245	6	0	0	6	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0008	3243	5	5	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0009	3244	5	5	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0010	3245	5	0	5	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0011	3243	4	4	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0012	3244	4	4	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0013	3245	4	1	1	1	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0014	3244	4	0	0	4	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0015	3245	4	4	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0016	3243	3	2	1	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314