JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYTH2_chr19_48464369_48487314	0/0	t0017	3244	3	0	0	3	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0018	3244	3	0	0	3	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0019	3245	2	0	2	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0020	3244	2	0	1	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0021	3244	2	0	0	2	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0022	3245	2	0	0	2	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0023	3245	2	0	0	2	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0024	3244	2	2	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0025	3244	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0026	3244	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0027	3245	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0028	3243	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0029	3244	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0030	3244	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0031	3245	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0032	3245	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0033	3245	1	0	0	0	1	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0034	3244	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0035	3210	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0036	3245	1	0	1	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0037	3245	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0038	3245	1	0	1	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0039	3244	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0040	3245	1	1	0	0	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0041	3244	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0042	3246	1	0	0	1	0	0	copy fasta	CYTH2	chr19	48464369	48487314
CYTH2_chr19_48464369_48487314	0/0	t0043	3245	1	0	0	0	0	1	copy fasta	CYTH2	chr19	48464369	48487314
CYTH3_chr7_6156779_6277624	1/1	t0001	3283	97	11	30	39	3	12	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0002	3283	64	11	8	45	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0003	3283	47	20	3	17	0	7	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0004	3283	23	0	0	20	0	3	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0005	3282	19	8	6	1	1	3	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0006	3283	17	6	5	2	0	4	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0007	3283	13	2	1	10	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0008	3283	5	4	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0009	3283	4	0	0	3	0	1	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0010	3283	4	4	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0011	3283	4	0	0	4	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0012	3283	3	0	0	3	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0013	3282	3	0	3	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0014	3283	3	3	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0015	3282	2	2	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0016	3283	2	0	2	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0017	3283	2	2	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0018	3283	2	2	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0019	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0020	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0021	3282	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0022	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0023	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624