JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYTH3_chr7_6156779_6277624	0/0	t0024	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0025	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0026	3283	1	0	0	0	0	1	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0027	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0028	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0029	3283	1	0	0	0	0	1	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0030	3282	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0031	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0032	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0033	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0034	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0035	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0036	3283	1	0	0	0	0	1	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0037	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0038	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0039	3282	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0040	3282	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0041	3282	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0042	3282	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0043	3282	1	0	0	0	0	1	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0044	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0045	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0046	3283	1	1	0	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0047	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0048	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0049	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0050	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0051	3283	1	0	1	0	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH3_chr7_6156779_6277624	0/0	t0052	3283	1	0	0	1	0	0	copy fasta	CYTH3	chr7	6156779	6277624
CYTH4_chr22_37277508_37320341	0/0	t0001	1893	64	25	2	26	2	9	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	1/0	t0002	1893	62	0	18	39	2	2	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0003	1893	57	1	11	40	1	4	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/1	t0004	1893	56	9	10	22	4	10	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0005	1893	44	3	13	19	3	6	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0006	1893	35	4	4	22	1	4	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0007	1893	18	17	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0008	1887	12	10	2	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0009	1893	7	7	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0010	1893	4	4	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0011	1893	3	2	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0012	1893	3	0	0	3	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0013	1893	3	1	2	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0014	1891	3	3	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0015	1893	2	0	2	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0016	1893	2	2	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0017	1893	2	0	0	2	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0018	1893	2	0	0	2	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0019	1893	2	1	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0020	1887	2	2	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0021	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341