Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADM2_chr22_50476543_50491437	0/0	t0082	3767	1	0	0	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0083	3789	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0084	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0085	3788	1	0	0	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0086	3788	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0087	3788	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0088	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0089	3789	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0090	3788	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0091	3788	1	0	0	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0092	3788	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0093	3789	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0094	3767	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0095	3789	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0096	3789	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0097	3788	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0098	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0099	3788	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0100	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0101	3767	1	0	0	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0102	3788	1	0	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0103	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0104	3788	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0105	3788	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0106	3789	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0107	3789	1	0	0	0	1	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0108	3789	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0109	3787	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM5_chr19_49684594_49695575	1/1	t0001	327	389	91	78	154	14	50	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	t0002	327	2	0	0	2	0	0	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	t0003	327	1	1	0	0	0	0	copy fasta	ADM5	chr19	49684594	49695575
ADM_chr11_10300073_10312397	1/1	t0001	935	243	57	34	121	9	20	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0002	936	140	22	35	57	9	17	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0003	936	8	8	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0004	936	6	6	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0005	935	2	0	0	0	0	2	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0006	935	2	0	0	2	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0007	935	1	0	0	0	0	1	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0008	936	1	1	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0009	935	1	0	0	1	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0010	936	1	0	0	0	0	1	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0011	936	1	0	0	0	0	1	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0012	936	1	0	0	1	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	t0013	935	1	0	1	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADNP2_chr18_80104262_80145346	0/0	t0001	1764	177	51	34	76	4	12	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	1/1	t0002	1762	84	11	11	50	2	8	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0003	1764	41	12	8	9	2	10	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0004	1764	34	1	10	17	3	3	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0005	1763	14	1	4	3	0	6	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0006	1765	8	6	0	2	0	0	copy fasta	ADNP2	chr18	80104262	80145346