JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYTH4_chr22_37277508_37320341	0/0	t0022	1893	1	0	0	0	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0023	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0024	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0025	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0026	1893	1	0	0	0	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0027	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0028	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0029	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0030	1893	1	0	0	0	1	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0031	1893	1	0	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0032	1891	1	0	0	0	0	1	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0033	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0034	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0035	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0036	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0037	1893	1	0	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0038	1893	1	0	1	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0039	1893	1	1	0	0	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0040	1893	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTH4_chr22_37277508_37320341	0/0	t0041	1909	1	0	0	1	0	0	copy fasta	CYTH4	chr22	37277508	37320341
CYTIP_chr2_157409619_157449089	0/0	t0001	1128	215	31	53	85	13	33	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	1/0	t0002	1128	50	42	5	0	0	2	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0003	1128	22	0	10	8	0	4	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0004	1117	11	8	0	2	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0005	1128	7	0	0	7	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0006	1128	6	6	0	0	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/1	t0007	1128	3	0	1	0	1	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0008	1117	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0009	1128	1	1	0	0	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0010	1128	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0011	1128	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0012	1128	1	0	0	0	0	1	copy fasta	CYTIP	chr2	157409619	157449089
CYTIP_chr2_157409619_157449089	0/0	t0013	1128	1	0	1	0	0	0	copy fasta	CYTIP	chr2	157409619	157449089
CYTL1_chr4_5009586_5024458	0/1	t0001	579	411	77	80	194	14	45	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0002	579	12	11	1	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0003	579	10	0	1	9	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	1/0	t0004	579	6	5	0	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0005	579	2	2	0	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0006	579	1	1	0	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0007	579	1	0	1	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0008	579	1	0	0	1	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0009	579	1	0	0	0	0	1	copy fasta	CYTL1	chr4	5009586	5024458
CYTL1_chr4_5009586_5024458	0/0	t0010	579	1	0	1	0	0	0	copy fasta	CYTL1	chr4	5009586	5024458
CYYR1_chr21_26461216_26578286	0/1	t0001	2632	116	13	22	56	9	15	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	1/0	t0002	2632	60	17	11	21	5	5	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0003	2628	43	23	16	0	1	3	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0004	2632	21	2	6	7	0	6	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0005	2632	21	4	3	7	2	5	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0006	2632	11	11	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0007	2632	10	0	6	0	1	3	copy fasta	CYYR1	chr21	26461216	26578286