JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYYR1_chr21_26461216_26578286	0/0	t0008	2632	7	7	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0009	2632	4	0	0	4	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0010	2631	3	0	0	3	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0011	2632	2	2	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0012	2632	2	2	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0013	2632	2	2	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0014	2632	2	1	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0015	2651	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0016	2628	1	0	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0017	2628	1	0	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0018	2628	1	0	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0019	2628	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0020	2628	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0021	2632	1	0	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0022	2632	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0023	2632	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0024	2632	1	0	1	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0025	2632	1	0	0	0	0	1	copy fasta	CYYR1	chr21	26461216	26578286
CYYR1_chr21_26461216_26578286	0/0	t0026	2632	1	1	0	0	0	0	copy fasta	CYYR1	chr21	26461216	26578286
CZIB_chr1_53209099_53225634	1/0	t0001	620	316	92	56	117	11	39	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/1	t0002	620	109	2	14	81	7	4	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0003	620	4	0	0	4	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0004	620	3	0	0	2	0	1	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0005	620	1	0	1	0	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0006	620	1	0	1	0	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0007	620	1	1	0	0	0	0	copy fasta	CZIB	chr1	53209099	53225634
CZIB_chr1_53209099_53225634	0/0	t0008	620	1	1	0	0	0	0	copy fasta	CZIB	chr1	53209099	53225634
D2HGDH_chr2_241729630_241773811	0/0	t0001	1001	72	4	15	40	4	9	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0002	1001	61	20	5	34	1	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/1	t0003	1001	51	1	11	27	2	9	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0004	1001	42	0	11	27	0	4	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0005	1001	27	12	3	5	1	6	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	1/0	t0006	1001	22	3	4	11	2	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0007	1001	22	16	4	0	2	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0008	1001	15	15	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0009	1001	10	0	0	10	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0010	1001	8	0	0	8	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0011	1001	7	0	5	0	1	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0012	1001	6	1	2	0	0	3	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0013	1001	6	2	3	0	1	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0014	1001	4	0	0	4	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0015	1001	3	2	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0016	1001	3	2	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0017	1001	2	0	0	2	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0018	1002	2	0	1	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0019	1001	2	0	1	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0020	1001	2	2	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0021	1001	2	2	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0022	1001	2	0	1	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0023	1002	2	1	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811