JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
D2HGDH_chr2_241729630_241773811	0/0	t0024	1002	2	0	0	2	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0025	1001	2	2	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0026	1001	2	0	0	2	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0027	1001	2	0	0	0	0	2	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0028	1001	2	0	2	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0029	1001	2	0	2	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0030	1001	2	2	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0031	1001	2	1	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0032	1001	2	1	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0033	1001	2	2	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0034	1001	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0035	1001	1	0	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0036	1002	1	0	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0037	1001	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0038	983	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0039	1001	1	0	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0040	1001	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0041	1001	1	0	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0042	1001	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0043	1001	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0044	1002	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0045	1002	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0046	1002	1	0	1	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0047	1001	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0048	1001	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0049	1001	1	0	0	1	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0050	1002	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0051	1002	1	0	0	0	0	1	copy fasta	D2HGDH	chr2	241729630	241773811
D2HGDH_chr2_241729630_241773811	0/0	t0052	1001	1	1	0	0	0	0	copy fasta	D2HGDH	chr2	241729630	241773811
DAAM1_chr14_59183667_59376403	0/0	t0001	2677	56	3	9	35	1	8	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/1	t0002	2682	32	2	7	14	2	6	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0003	2677	18	12	5	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0004	2677	14	0	1	8	1	4	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0005	2676	14	7	4	0	0	3	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0006	2683	9	0	8	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0007	2677	9	0	9	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0008	2677	9	0	0	9	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0009	2683	7	3	1	2	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0010	2683	6	4	2	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0011	2678	6	0	2	3	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0012	2678	6	0	0	4	0	2	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0013	2678	5	1	1	1	1	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0014	2677	5	0	2	0	3	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0015	2674	5	4	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0016	2676	5	0	1	4	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0017	2682	4	0	3	0	1	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0018	2675	4	4	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0019	2677	4	3	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	1/0	t0020	2684	4	0	2	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0021	2682	3	0	0	3	0	0	copy fasta	DAAM1	chr14	59183667	59376403