JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAAM1_chr14_59183667_59376403	0/0	t0022	2676	3	3	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0023	2677	3	1	0	1	1	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0024	2676	3	3	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0025	2683	3	0	0	0	0	3	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0026	2681	3	0	0	3	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0027	2682	3	1	0	0	2	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0028	2683	2	0	0	0	0	2	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0029	2678	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0030	2675	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0031	2675	2	1	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0032	2675	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0033	2684	2	0	2	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0034	2679	2	0	1	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0035	2678	2	1	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0036	2676	2	2	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0037	2677	2	0	1	0	1	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0038	2677	1	0	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0039	2683	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0040	2678	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0041	2677	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0042	2697	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0043	2678	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0044	2680	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0045	2676	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0046	2678	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0047	2678	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0048	2681	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0049	2676	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0050	2677	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0051	2673	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0052	2674	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0053	2684	1	0	0	0	1	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0054	2678	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0055	2675	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0056	2684	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0057	2675	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0058	2677	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0059	2682	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0060	2682	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0061	2678	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0062	2677	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0063	2678	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0064	2678	1	0	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0065	2677	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0066	2676	1	0	1	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0067	2675	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0068	2674	1	0	0	0	0	1	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0069	2676	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0070	2675	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM1_chr14_59183667_59376403	0/0	t0071	2676	1	1	0	0	0	0	copy fasta	DAAM1	chr14	59183667	59376403