JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAAM1_chr14_59183667_59376403	0/0	t0072	2674	1	0	0	1	0	0	copy fasta	DAAM1	chr14	59183667	59376403
DAAM2_chr6_39787376_39909869	0/1	t0001	2979	100	30	22	26	2	19	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	1/0	t0002	2979	55	10	13	20	1	10	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0003	2983	39	6	6	26	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0004	2983	18	0	0	17	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0005	2983	8	8	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0006	2982	7	0	0	7	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0007	2983	6	0	5	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0008	2979	5	0	2	0	2	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0009	2979	5	5	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0010	2983	4	0	0	3	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0011	2979	4	4	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0012	2982	4	0	0	4	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0013	2982	4	0	0	4	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0014	2983	4	3	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0015	2982	3	0	0	3	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0016	2979	3	3	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0017	2979	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0018	2979	2	0	0	2	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0019	2979	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0020	2979	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0021	2979	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0022	2983	2	1	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0023	2983	2	2	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0024	2983	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0025	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0026	2983	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0027	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0028	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0029	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0030	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0031	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0032	2979	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0033	2979	1	0	0	0	1	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0034	2979	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0035	2983	1	1	0	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0036	2979	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0037	2979	1	0	0	1	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0038	2975	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0039	2983	1	0	0	0	0	1	copy fasta	DAAM2	chr6	39787376	39909869
DAAM2_chr6_39787376_39909869	0/0	t0040	2979	1	0	1	0	0	0	copy fasta	DAAM2	chr6	39787376	39909869
DAB1_chr1_56989778_57429060	1/0	t0001	3634	48	22	10	6	1	8	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/1	t0002	3634	33	15	8	7	1	1	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0003	3633	16	7	5	3	0	1	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0004	3634	7	1	3	0	0	3	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0005	3635	6	4	2	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0006	3634	5	5	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0007	3635	4	4	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0008	3635	3	2	1	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0009	3633	2	2	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060