JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAB1_chr1_56989778_57429060	0/0	t0010	3634	2	2	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0011	3634	2	1	1	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0012	3634	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0013	3634	1	0	0	1	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0014	3635	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0015	3633	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0016	3634	1	0	0	0	0	1	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0017	3634	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0018	3634	1	0	1	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0019	3634	1	0	0	1	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0020	3634	1	0	1	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB1_chr1_56989778_57429060	0/0	t0021	3634	1	1	0	0	0	0	copy fasta	DAB1	chr1	56989778	57429060
DAB2IP_chr9_121646634_121790530	1/1	t0001	3175	126	24	31	47	9	13	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0002	3175	43	27	0	13	0	3	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0003	3175	9	4	4	0	1	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0004	3175	6	6	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0005	3175	3	3	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0006	3175	3	0	0	3	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0007	3175	3	3	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0008	3173	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0009	3175	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0010	3175	2	0	0	2	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0011	3175	2	0	0	2	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0012	3175	2	2	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0013	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0014	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0015	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0016	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0017	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0018	3175	1	0	1	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0019	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0020	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0021	3173	1	0	1	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0022	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0023	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0024	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0025	3175	1	0	1	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0026	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0027	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0028	3173	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0029	3173	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0030	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0031	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0032	3175	1	0	0	1	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2IP_chr9_121646634_121790530	0/0	t0033	3175	1	1	0	0	0	0	copy fasta	DAB2IP	chr9	121646634	121790530
DAB2_chr5_39366677_39429980	1/0	t0001	2033	144	24	14	101	0	4	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/1	t0002	2032	85	20	22	26	2	14	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0003	2033	75	6	20	35	4	10	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0004	2033	33	0	13	8	5	7	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0005	2034	30	19	5	5	1	0	copy fasta	DAB2	chr5	39366677	39429980