JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAB2_chr5_39366677_39429980	0/0	t0006	2034	6	5	1	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0007	2033	4	4	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0008	2034	4	2	1	0	0	1	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0009	2033	3	3	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0010	2033	3	0	0	0	0	3	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0011	2032	3	3	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0012	2034	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0013	2033	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0014	2033	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0015	2033	2	0	0	2	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0016	2033	2	2	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0017	2033	2	0	0	2	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0018	2033	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0019	2032	1	0	1	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0020	2034	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0021	2032	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0022	2033	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0023	2034	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0024	2032	1	0	1	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0025	2033	1	0	0	0	0	1	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0026	2034	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0027	2034	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0028	2033	1	1	0	0	0	0	copy fasta	DAB2	chr5	39366677	39429980
DAB2_chr5_39366677_39429980	0/0	t0029	2033	1	0	0	1	0	0	copy fasta	DAB2	chr5	39366677	39429980
DACH1_chr13_71432966_71872204	0/1	t0001	3122	34	18	5	3	0	7	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0002	3121	22	18	1	0	0	3	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	1/0	t0003	3125	21	17	2	1	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0004	3120	11	10	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0005	3121	3	1	1	1	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0006	3121	1	0	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0007	3122	1	0	0	1	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0008	3122	1	0	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0009	3122	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0010	3122	1	0	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0011	3121	1	0	1	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0012	3121	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0013	3120	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0014	3122	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0015	3121	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH1_chr13_71432966_71872204	0/0	t0016	3125	1	1	0	0	0	0	copy fasta	DACH1	chr13	71432966	71872204
DACH2_chrX_86143451_86837602	0/0	t0001	618	97	41	9	33	3	11	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	t0002	618	66	11	13	35	2	5	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	t0003	614	2	1	1	0	0	0	copy fasta	DACH2	chrX	86143451	86837602
DACH2_chrX_86143451_86837602	0/0	t0004	618	1	1	0	0	0	0	copy fasta	DACH2	chrX	86143451	86837602
DACT1_chr14_58632962_58653321	0/0	t0001	1429	245	26	31	148	9	31	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0002	1429	102	37	25	32	4	4	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0003	1425	9	2	3	2	1	1	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0004	1430	8	7	1	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0005	1429	4	4	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0006	1429	4	4	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321