JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DACT1_chr14_58632962_58653321	0/0	t0007	1429	4	4	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0008	1429	3	3	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0009	1429	3	0	0	0	0	3	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0010	1429	2	2	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0011	1429	1	0	0	0	0	1	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0012	1429	1	0	1	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0013	1429	1	0	1	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT1_chr14_58632962_58653321	0/0	t0014	1429	1	1	0	0	0	0	copy fasta	DACT1	chr14	58632962	58653321
DACT2_chr6_168301904_168324777	0/1	t0001	673	167	3	36	102	12	13	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	1/0	t0002	673	61	19	10	22	1	8	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0003	672	58	32	11	5	1	9	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0004	673	58	27	7	14	3	7	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0005	673	51	1	9	37	0	4	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0006	672	46	0	12	31	1	2	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0007	673	13	6	2	2	0	3	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0008	673	6	1	0	5	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0009	672	5	5	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0010	672	4	4	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0011	673	3	0	0	3	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0012	673	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0013	673	1	1	0	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0014	673	1	0	1	0	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT2_chr6_168301904_168324777	0/0	t0015	673	1	0	0	1	0	0	copy fasta	DACT2	chr6	168301904	168324777
DACT3_chr19_46642551_46666182	1/1	t0001	1050	299	19	66	168	12	32	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0002	1050	141	68	13	42	3	15	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0003	1049	2	0	0	2	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0004	1050	2	0	2	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0005	1050	2	2	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0006	1049	2	0	0	1	1	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0007	1067	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0008	1067	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0009	1050	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0010	1049	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0011	1012	1	0	0	0	0	1	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0012	1050	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0013	1050	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0014	1050	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0015	1050	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0016	1050	1	0	0	1	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0017	1050	1	0	1	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DACT3_chr19_46642551_46666182	0/0	t0018	1050	1	1	0	0	0	0	copy fasta	DACT3	chr19	46642551	46666182
DAD1_chr14_22559907_22594224	1/0	t0001	343	198	38	41	91	7	20	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/1	t0002	343	86	13	22	34	4	12	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0003	343	46	9	4	22	2	9	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0004	343	25	21	1	0	3	0	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0005	343	18	0	6	6	2	4	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0006	343	7	7	0	0	0	0	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0007	343	3	0	0	3	0	0	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0008	343	2	2	0	0	0	0	copy fasta	DAD1	chr14	22559907	22594224
DAD1_chr14_22559907_22594224	0/0	t0009	343	1	0	0	0	0	1	copy fasta	DAD1	chr14	22559907	22594224