JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAG1_chr3_49465267_49540615	0/1	t0001	2700	87	19	17	29	5	16	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0002	2700	72	19	15	24	7	7	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0003	2700	42	20	13	1	5	3	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0004	2700	11	11	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	1/0	t0005	2700	8	7	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0006	2700	5	5	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0007	2700	2	0	0	0	0	2	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0008	2700	2	0	0	2	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0009	2700	2	2	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0010	2700	2	0	1	0	1	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0011	2700	1	0	0	0	0	1	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0012	2700	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0013	2700	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0014	2700	1	1	0	0	0	0	copy fasta	DAG1	chr3	49465267	49540615
DAG1_chr3_49465267_49540615	0/0	t0015	2700	1	0	0	0	0	1	copy fasta	DAG1	chr3	49465267	49540615
DAGLA_chr11_61675391_61752001	1/1	t0001	2671	111	51	9	40	3	6	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0002	2667	62	5	15	32	3	7	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0003	2667	45	13	11	13	2	6	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0004	2671	34	5	0	25	1	3	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0005	2671	33	2	17	4	2	8	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0006	2671	27	0	12	4	3	8	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0007	2671	6	6	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0008	2671	3	0	0	3	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0009	2671	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0010	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0011	2671	1	0	0	0	0	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0012	2671	1	0	0	0	0	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0013	2667	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0014	2667	1	0	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0015	2667	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0016	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0017	2671	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0018	2671	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0019	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0020	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0021	2671	1	0	1	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0022	2667	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0023	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0024	2671	1	1	0	0	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0025	2671	1	0	0	1	0	0	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0026	2667	1	0	0	0	0	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLA_chr11_61675391_61752001	0/0	t0027	2671	1	0	0	0	0	1	copy fasta	DAGLA	chr11	61675391	61752001
DAGLB_chr7_6404129_6452954	0/0	t0001	821	125	29	27	54	4	11	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0002	822	120	19	13	77	0	11	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	1/1	t0003	821	92	16	26	21	10	17	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0004	821	10	6	1	1	0	2	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0005	821	9	9	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0006	822	7	6	1	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0007	821	5	0	0	5	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0008	822	4	4	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954