JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAGLB_chr7_6404129_6452954	0/0	t0009	822	3	3	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0010	821	2	0	0	2	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0011	822	1	1	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0012	822	1	0	0	0	0	1	copy fasta	DAGLB	chr7	6404129	6452954
DAGLB_chr7_6404129_6452954	0/0	t0013	821	1	1	0	0	0	0	copy fasta	DAGLB	chr7	6404129	6452954
DALRD3_chr3_49010488_49023580	1/1	t0001	117	256	88	50	69	16	31	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	t0002	117	1	0	0	0	0	1	copy fasta	DALRD3	chr3	49010488	49023580
DALRD3_chr3_49010488_49023580	0/0	t0003	117	1	0	0	1	0	0	copy fasta	DALRD3	chr3	49010488	49023580
DAND5_chr19_12964576_12979760	0/1	t0001	1213	239	47	53	91	16	31	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0002	1213	41	0	6	29	0	6	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0003	1214	36	0	3	26	0	7	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0004	1212	13	10	3	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0005	1214	10	3	5	2	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0006	1213	9	9	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0007	1213	7	4	2	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0008	1213	6	6	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0009	1214	5	1	0	2	0	2	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0010	1214	4	4	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0011	1213	3	3	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0012	1212	3	0	2	0	0	1	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0013	1213	3	3	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	1/0	t0014	1212	3	0	1	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0015	1213	3	3	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0016	1215	2	0	0	2	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0017	1215	2	0	0	2	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0018	1213	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0019	1214	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0020	1213	1	0	0	0	0	1	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0021	1213	1	0	0	0	1	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0022	1213	1	1	0	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0023	1213	1	0	1	0	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0024	1214	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0025	1213	1	0	0	1	0	0	copy fasta	DAND5	chr19	12964576	12979760
DAND5_chr19_12964576_12979760	0/0	t0026	1213	1	0	0	0	1	0	copy fasta	DAND5	chr19	12964576	12979760
DAOA_chr13_105461045_105496034	1/1	t0001	324	349	70	66	160	11	40	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0002	324	37	25	10	0	1	1	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0003	324	21	0	2	17	1	1	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0004	324	2	0	0	0	0	2	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0005	324	1	0	0	1	0	0	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0006	324	1	0	0	0	1	0	copy fasta	DAOA	chr13	105461045	105496034
DAOA_chr13_105461045_105496034	0/0	t0007	324	1	1	0	0	0	0	copy fasta	DAOA	chr13	105461045	105496034
DAO_chr12_108875092_108906043	1/1	t0001	651	215	61	40	78	10	24	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0002	651	148	14	19	94	5	16	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0003	651	10	7	3	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0004	651	7	7	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0005	651	2	0	0	2	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0006	651	2	2	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0007	651	2	2	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0008	651	1	0	0	0	1	0	copy fasta	DAO	chr12	108875092	108906043
DAO_chr12_108875092_108906043	0/0	t0009	651	1	1	0	0	0	0	copy fasta	DAO	chr12	108875092	108906043