Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADNP2_chr18_80104262_80145346	0/0	t0007	1764	5	0	0	5	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0008	1764	4	1	3	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0009	1764	4	0	0	4	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0010	1764	2	0	0	0	1	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0011	1762	2	0	0	2	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0012	1763	2	1	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0013	1763	2	0	2	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0014	1764	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0015	1763	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0016	1764	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0017	1764	1	0	0	0	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0018	1764	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0019	1762	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0020	1762	1	0	0	0	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0021	1764	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	t0022	1762	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP_chr20_50883918_50936437	0/1	t0001	3365	50	0	10	29	3	7	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0002	3362	26	2	7	14	0	3	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0003	3363	23	4	4	15	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0004	3364	20	0	3	11	1	5	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0005	3361	16	2	4	10	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0006	3361	13	0	5	4	1	3	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0007	3366	10	1	1	6	0	2	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0008	3362	10	2	0	8	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0009	3366	9	0	3	6	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0010	3364	7	4	2	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0011	3364	7	1	0	6	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0012	3360	7	0	0	1	2	4	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0013	3365	6	0	3	3	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0014	3363	6	6	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0015	3361	6	5	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0016	3361	6	1	2	2	0	1	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0017	3365	5	0	0	5	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0018	3365	5	0	1	4	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0019	3364	5	2	0	3	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0020	3361	4	1	0	1	0	2	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0021	3365	4	0	1	1	0	2	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0022	3367	3	1	2	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0023	3368	3	0	3	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0024	3367	3	0	2	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0025	3367	3	0	0	3	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0026	3363	3	3	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0027	3362	3	3	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0028	3365	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0029	3364	2	0	2	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0030	3363	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0031	3366	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0032	3366	2	1	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0033	3364	2	0	0	1	0	1	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0034	3365	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437