JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAP3_chr1_155684091_155744010	1/0	t0001	860	82	15	17	38	3	8	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0002	880	43	1	10	26	0	6	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0003	872	31	7	4	12	2	6	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0004	864	20	14	2	2	0	2	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0005	868	19	18	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/1	t0006	860	17	10	4	0	1	1	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0007	860	16	13	0	1	0	2	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0008	876	13	0	2	10	1	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0009	884	9	0	0	9	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0010	872	6	3	0	1	1	1	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0011	868	5	3	0	0	0	2	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0012	860	3	0	0	0	0	3	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0013	880	3	0	1	1	0	1	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0014	860	2	0	0	2	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0015	872	2	0	1	0	1	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0016	884	2	0	2	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0017	876	2	0	0	2	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0018	864	1	0	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0019	880	1	0	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0020	877	1	0	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0021	888	1	0	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0022	864	1	0	0	0	1	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0023	860	1	0	0	1	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0024	860	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0025	880	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0026	860	1	0	1	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0027	860	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0028	860	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0029	860	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAP3_chr1_155684091_155744010	0/0	t0030	860	1	1	0	0	0	0	copy fasta	DAP3	chr1	155684091	155744010
DAPK1_chr9_87492867_87713634	1/1	t0001	1620	175	45	39	59	9	21	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0002	1620	26	26	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0003	1620	13	0	0	10	1	2	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0004	1620	4	2	0	0	0	2	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0005	1620	4	1	1	2	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0006	1620	3	3	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0007	1620	3	2	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0008	1620	2	0	1	1	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0009	1620	1	1	0	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0010	1620	1	0	0	0	0	1	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0011	1620	1	0	0	1	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0012	1620	1	0	0	1	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0013	1620	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK1_chr9_87492867_87713634	0/0	t0014	1620	1	0	1	0	0	0	copy fasta	DAPK1	chr9	87492867	87713634
DAPK2_chr15_63902036_64051485	0/1	t0001	1652	117	32	36	16	13	19	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	1/0	t0002	1679	9	8	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0003	1655	9	8	1	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0004	1706	6	1	2	0	0	3	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0005	1706	5	0	1	0	1	3	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0006	1688	5	0	2	2	0	1	copy fasta	DAPK2	chr15	63902036	64051485