JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAPK2_chr15_63902036_64051485	0/0	t0007	1670	5	5	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0008	1652	5	5	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0009	1670	4	4	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0010	1652	4	4	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0011	1670	3	3	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0012	1652	3	0	0	2	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0013	1652	3	0	0	3	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0014	1670	3	2	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0015	1673	2	2	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0016	1688	2	2	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0017	1670	2	2	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0018	1724	2	0	2	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0019	1688	2	0	0	2	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0020	1652	2	0	0	0	0	2	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0021	1670	2	0	1	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0022	1673	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0023	1670	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0024	1688	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0025	1688	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0026	1697	1	0	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0027	1688	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0028	1706	1	0	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0029	1724	1	0	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0030	1724	1	0	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0031	1688	1	0	0	1	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0032	1652	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0033	1652	1	0	0	0	0	1	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0034	1652	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0035	1652	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0036	1670	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0037	1670	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0038	1655	1	0	1	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0039	1664	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK2_chr15_63902036_64051485	0/0	t0040	1652	1	1	0	0	0	0	copy fasta	DAPK2	chr15	63902036	64051485
DAPK3_chr19_3953453_3976099	0/1	t0001	922	187	17	52	83	10	24	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0002	922	100	31	20	39	4	6	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	1/0	t0003	922	57	30	9	3	2	12	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0004	922	6	6	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0005	928	5	0	0	5	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0006	922	4	0	0	4	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0007	922	1	1	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0008	922	1	0	1	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0009	922	1	1	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0010	922	1	1	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPK3_chr19_3953453_3976099	0/0	t0011	922	1	1	0	0	0	0	copy fasta	DAPK3	chr19	3953453	3976099
DAPL1_chr2_158790317_158820990	1/0	t0001	226	192	34	22	105	3	27	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/1	t0002	226	151	56	42	18	15	19	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	t0003	226	15	0	0	15	0	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPL1_chr2_158790317_158820990	0/0	t0004	226	2	0	0	2	0	0	copy fasta	DAPL1	chr2	158790317	158820990
DAPP1_chr4_99811827_99875190	1/1	t0001	2093	146	22	34	68	3	17	copy fasta	DAPP1	chr4	99811827	99875190