JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAPP1_chr4_99811827_99875190	0/0	t0002	2094	56	7	10	36	0	3	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0003	2093	54	26	13	6	4	5	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0004	2093	29	0	0	29	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0005	2093	18	10	4	3	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0006	2093	7	0	2	0	2	3	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0007	2093	6	5	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0008	2092	5	0	0	5	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0009	2094	4	0	0	3	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0010	2093	4	4	0	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0011	2093	4	0	0	4	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0012	2094	4	0	4	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0013	2093	3	3	0	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0014	2093	3	2	0	0	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0015	2093	3	3	0	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0016	2093	3	1	1	0	1	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0017	2094	2	1	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0018	2094	2	0	0	0	0	2	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0019	2092	2	0	0	0	2	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0020	2093	2	0	0	2	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0021	2093	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0022	2093	1	0	0	1	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0023	2093	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0024	2093	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0025	2094	1	0	0	0	0	1	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0026	2093	1	1	0	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0027	2093	1	0	1	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0028	2094	1	0	0	1	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAPP1_chr4_99811827_99875190	0/0	t0029	2093	1	1	0	0	0	0	copy fasta	DAPP1	chr4	99811827	99875190
DAP_chr5_10674230_10766234	0/1	t0001	1993	120	31	22	46	4	16	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0002	1993	95	17	24	44	4	6	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0003	1993	33	3	3	27	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0004	1993	25	4	7	8	1	5	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0005	1993	21	8	9	0	1	3	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0006	1993	15	0	0	10	0	5	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0007	1992	8	0	0	8	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0008	1993	7	7	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	1/0	t0009	1993	6	0	0	5	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0010	1993	5	1	0	4	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0011	1993	4	4	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0012	1993	4	0	0	4	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0013	1993	3	0	0	3	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0014	1993	3	0	0	3	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0015	1993	3	3	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0016	1993	2	0	0	2	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0017	1993	2	2	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0018	1992	2	0	0	2	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0019	1993	1	0	0	0	0	1	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0020	1993	1	0	1	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0021	1993	1	0	0	0	0	1	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0022	1993	1	1	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234