JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAP_chr5_10674230_10766234	0/0	t0023	1993	1	0	0	0	0	1	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0024	1993	1	0	0	1	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0025	1993	1	0	0	1	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0026	1993	1	0	0	0	1	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0027	1993	1	0	0	0	0	1	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0028	1993	1	0	0	0	1	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0029	1993	1	0	0	0	0	1	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0030	1993	1	1	0	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0031	1993	1	0	1	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DAP_chr5_10674230_10766234	0/0	t0032	1993	1	0	1	0	0	0	copy fasta	DAP	chr5	10674230	10766234
DARS1_chr2_135900881_135990626	1/1	t0001	1594	225	47	47	99	3	27	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0002	1601	47	2	10	28	2	5	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0003	1590	20	0	0	20	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0004	1594	13	1	4	6	0	2	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0005	1602	11	1	2	7	1	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0006	1604	6	6	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0007	1593	6	0	2	4	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0008	1598	5	0	0	3	0	2	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0009	1594	5	5	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0010	1603	4	2	1	1	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0011	1600	4	2	2	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0012	1594	3	3	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0013	1600	3	2	1	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0014	1605	2	2	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0015	1615	2	2	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0016	1613	2	1	1	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0017	1594	2	1	0	1	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0018	1592	2	2	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0019	1606	1	0	0	0	0	1	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0020	1604	1	0	1	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0021	1604	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0022	1598	1	0	0	0	0	1	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0023	1616	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0024	1615	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0025	1612	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0026	1608	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0027	1607	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0028	1607	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0029	1607	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0030	1606	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0031	1604	1	0	0	1	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0032	1601	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0033	1601	1	0	1	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS1_chr2_135900881_135990626	0/0	t0034	1588	1	1	0	0	0	0	copy fasta	DARS1	chr2	135900881	135990626
DARS2_chr1_173819673_173863546	1/1	t0001	1399	291	45	43	152	14	35	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0002	1399	43	39	4	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0003	1399	3	0	3	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0004	1399	3	0	0	3	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0005	1399	1	0	0	1	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0006	1399	1	0	0	0	0	1	copy fasta	DARS2	chr1	173819673	173863546