JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DARS2_chr1_173819673_173863546	0/0	t0007	1399	1	1	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DARS2_chr1_173819673_173863546	0/0	t0008	1399	1	1	0	0	0	0	copy fasta	DARS2	chr1	173819673	173863546
DAW1_chr2_227866631_227929344	1/1	t0001	436	315	83	56	132	11	31	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	t0002	436	21	1	4	14	1	1	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	t0003	436	2	0	0	2	0	0	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	t0004	436	1	0	0	0	0	1	copy fasta	DAW1	chr2	227866631	227929344
DAW1_chr2_227866631_227929344	0/0	t0005	436	1	0	0	0	0	1	copy fasta	DAW1	chr2	227866631	227929344
DAXX_chr6_33313558_33327959	0/1	t0001	336	180	41	32	85	5	16	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0002	337	101	51	15	22	2	11	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0003	338	79	2	17	45	6	9	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0004	335	6	3	2	1	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0005	336	3	0	0	3	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0006	336	2	0	0	0	0	2	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0007	337	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0008	337	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0009	335	1	0	0	0	1	0	copy fasta	DAXX	chr6	33313558	33327959
DAXX_chr6_33313558_33327959	0/0	t0010	336	1	1	0	0	0	0	copy fasta	DAXX	chr6	33313558	33327959
DAZ1_chrY_23124355_23204008	1/1	t0001	2101	60	13	12	23	1	9	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	t0002	2101	1	0	0	1	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	t0003	2101	1	1	0	0	0	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ1_chrY_23124355_23204008	0/0	t0004	2102	1	0	0	0	1	0	copy fasta	DAZ1	chrY	23124355	23204008
DAZ2_chrY_23214533_23296356	1/1	t0001	2101	53	17	12	7	3	12	copy fasta	DAZ2	chrY	23214533	23296356
DAZ2_chrY_23214533_23296356	0/0	t0002	2101	1	0	0	0	1	0	copy fasta	DAZ2	chrY	23214533	23296356
DAZ3_chrY_24758069_24818393	1/0	t0001	2101	40	12	8	13	4	2	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	t0002	2099	1	1	0	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	t0003	2101	1	1	0	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	t0004	2102	1	0	0	0	0	1	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	t0005	2101	1	0	1	0	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ3_chrY_24758069_24818393	0/0	t0006	2101	1	0	0	1	0	0	copy fasta	DAZ3	chrY	24758069	24818393
DAZ4_chrY_24828919_24912040	1/0	t0001	2101	41	10	9	12	3	6	copy fasta	DAZ4	chrY	24828919	24912040
DAZAP1_chr19_1402586_1440684	0/0	t0001	962	49	8	13	23	1	4	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	1/1	t0002	961	44	12	7	15	2	6	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0003	965	28	7	2	9	0	10	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0004	967	27	8	4	12	3	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0005	964	26	7	4	12	1	2	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0006	971	24	3	7	9	2	3	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0007	968	24	6	4	12	1	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0008	974	18	7	2	5	1	3	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0009	959	17	5	2	9	1	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0010	970	14	5	5	1	0	3	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0011	973	12	5	2	4	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0012	958	11	6	2	2	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0013	977	7	2	1	3	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0014	979	6	3	1	0	0	2	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0015	963	6	0	2	3	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0016	980	5	1	3	0	1	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0017	976	5	2	0	2	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0018	985	4	1	3	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0019	966	4	2	0	2	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0020	960	4	2	0	1	0	1	copy fasta	DAZAP1	chr19	1402586	1440684