JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAZAP1_chr19_1402586_1440684	0/0	t0021	955	4	1	0	3	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0022	986	2	0	1	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0023	982	2	0	1	0	1	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0024	983	2	0	1	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0025	973	2	0	0	2	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0026	972	2	0	0	1	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0027	969	2	0	0	2	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0028	956	2	0	0	1	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0029	951	2	1	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0030	992	1	0	0	0	1	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0031	987	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0032	983	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0033	981	1	0	0	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0034	979	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0035	980	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0036	976	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0037	977	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0038	978	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0039	974	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0040	973	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0041	974	1	0	1	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0042	973	1	0	0	0	0	1	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0043	971	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0044	961	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0045	958	1	0	0	1	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0046	959	1	1	0	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0047	949	1	1	0	0	0	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP1_chr19_1402586_1440684	0/0	t0048	950	1	0	0	0	1	0	copy fasta	DAZAP1	chr19	1402586	1440684
DAZAP2_chr12_51233826_51248933	0/1	t0001	1558	174	42	43	60	8	20	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0002	1558	131	18	25	79	3	6	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	1/0	t0003	1558	52	11	9	18	2	11	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0004	1558	25	1	0	21	0	3	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0005	1558	22	1	6	11	2	2	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0006	1558	6	6	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0007	1553	6	2	2	0	2	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0008	1558	5	5	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0009	1558	5	5	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0010	1558	3	3	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0011	1558	2	2	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0012	1558	1	1	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0013	1553	1	0	0	0	1	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0014	1553	1	0	0	1	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0015	1558	1	0	0	1	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0016	1558	1	1	0	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0017	1558	1	0	0	1	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZAP2_chr12_51233826_51248933	0/0	t0018	1558	1	0	1	0	0	0	copy fasta	DAZAP2	chr12	51233826	51248933
DAZL_chr3_16581792_16610423	0/1	t0001	2088	174	52	33	69	7	12	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0002	2088	122	9	19	83	0	11	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0003	2087	94	14	12	49	2	17	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	1/0	t0004	2087	10	0	5	0	4	0	copy fasta	DAZL	chr3	16581792	16610423