JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DAZL_chr3_16581792_16610423	0/0	t0005	2087	9	1	7	0	1	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0006	2088	5	5	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0007	2088	4	4	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0008	2088	4	0	0	4	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0009	2088	3	3	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0010	2088	3	0	3	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0011	2088	3	3	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0012	2088	2	0	0	2	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0013	2088	2	0	2	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0014	2088	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0015	2088	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0016	2088	1	1	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0017	2088	1	0	1	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0018	2088	1	1	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0019	2088	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0020	2088	1	1	0	0	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0021	2087	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0022	2087	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0023	2088	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DAZL_chr3_16581792_16610423	0/0	t0024	2088	1	0	0	1	0	0	copy fasta	DAZL	chr3	16581792	16610423
DBF4B_chr17_44703665_44757264	1/0	t0001	1168	217	62	38	89	7	20	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/1	t0002	1168	54	16	17	13	3	4	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0003	1168	9	7	2	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0004	1168	2	2	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0005	1168	1	1	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0006	1168	1	1	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0007	1168	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0008	1168	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0009	1168	1	0	1	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4B_chr17_44703665_44757264	0/0	t0010	1168	1	1	0	0	0	0	copy fasta	DBF4B	chr17	44703665	44757264
DBF4_chr7_87871493_87914553	1/1	t0001	1631	132	21	27	62	9	11	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0002	1632	43	14	11	15	0	3	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0003	1621	39	14	8	15	0	2	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0004	1632	14	0	7	0	2	5	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0005	1632	13	0	0	13	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0006	1632	8	8	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0007	1631	6	6	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0008	1631	5	1	1	0	1	2	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0009	1631	4	4	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0010	1632	4	4	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0011	1631	3	0	0	3	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0012	1631	3	0	0	3	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0013	1631	2	0	0	2	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0014	1621	2	0	0	2	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0015	1631	2	0	1	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0016	1632	2	2	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0017	1631	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0018	1632	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0019	1632	1	0	0	0	0	1	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0020	1632	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553