JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBF4_chr7_87871493_87914553	0/0	t0021	1632	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0022	1631	1	0	1	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0023	1632	1	1	0	0	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0024	1631	1	0	0	0	0	1	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0025	1631	1	0	0	1	0	0	copy fasta	DBF4	chr7	87871493	87914553
DBF4_chr7_87871493_87914553	0/0	t0026	1631	1	0	0	0	0	1	copy fasta	DBF4	chr7	87871493	87914553
DBH_chr9_133631363_133664329	1/1	t0001	892	204	56	44	74	12	16	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0002	892	120	31	19	51	2	17	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0003	892	35	2	8	16	0	9	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0004	892	28	0	2	23	0	3	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0005	892	3	3	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0006	892	2	2	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0007	892	2	2	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0008	892	2	0	1	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0009	892	2	0	2	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0010	892	1	0	0	1	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0011	892	1	0	0	0	0	1	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0012	892	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBH_chr9_133631363_133664329	0/0	t0013	892	1	1	0	0	0	0	copy fasta	DBH	chr9	133631363	133664329
DBI_chr2_119361977_119377543	1/1	t0001	301	421	89	84	180	18	48	copy fasta	DBI	chr2	119361977	119377543
DBI_chr2_119361977_119377543	0/0	t0002	301	1	1	0	0	0	0	copy fasta	DBI	chr2	119361977	119377543
DBN1_chr5_177451610_177478634	1/0	t0001	937	151	40	32	52	5	21	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0002	931	55	8	14	27	1	5	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0003	938	39	4	7	25	0	3	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0004	930	31	7	13	2	4	5	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0005	936	19	9	5	4	1	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/1	t0006	932	11	3	1	4	1	1	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0007	939	10	10	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0008	939	8	1	0	7	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0009	937	4	4	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0010	937	4	0	0	0	0	4	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0011	937	4	4	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0012	937	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0013	938	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0014	937	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0015	937	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0016	937	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0017	937	1	0	0	1	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0018	938	1	0	1	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0019	937	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0020	937	1	0	0	0	0	1	copy fasta	DBN1	chr5	177451610	177478634
DBN1_chr5_177451610_177478634	0/0	t0021	938	1	1	0	0	0	0	copy fasta	DBN1	chr5	177451610	177478634
DBNDD1_chr16_89999871_90024456	1/1	t0001	1580	193	46	46	54	12	33	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0002	1580	125	4	5	105	1	10	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0003	1580	38	26	7	0	1	4	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0004	1580	18	2	13	3	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0005	1580	10	10	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0006	1580	5	0	0	5	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0007	1580	4	0	4	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0008	1580	3	2	1	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456