JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBNDD1_chr16_89999871_90024456	0/0	t0009	1580	3	3	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0010	1580	2	2	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0011	1580	2	0	0	2	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0012	1580	2	2	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0013	1580	1	1	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0014	1580	1	1	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0015	1580	1	0	0	1	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0016	1580	1	0	0	0	0	1	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0017	1580	1	0	1	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0018	1580	1	1	0	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD1_chr16_89999871_90024456	0/0	t0019	1580	1	0	1	0	0	0	copy fasta	DBNDD1	chr16	89999871	90024456
DBNDD2_chr20_45403289_45415607	1/1	t0001	647	406	81	76	191	14	42	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	t0002	647	7	6	1	0	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	t0003	647	1	0	1	0	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	t0004	647	1	1	0	0	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNDD2_chr20_45403289_45415607	0/0	t0005	647	1	0	0	1	0	0	copy fasta	DBNDD2	chr20	45403289	45415607
DBNL_chr7_44039702_44074456	0/0	t0001	8582	85	4	19	48	3	11	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0002	8582	62	20	8	17	3	14	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0003	8582	29	18	9	0	1	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0004	8582	26	2	7	17	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0005	8578	24	0	8	12	1	3	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	1/0	t0006	8577	18	0	0	17	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0007	8578	13	3	3	5	0	2	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0008	8578	11	0	5	1	2	3	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0009	8578	7	7	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0010	8582	7	0	0	7	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0011	8578	5	4	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0012	8578	5	5	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0013	8578	4	4	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0014	8582	4	4	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0015	8582	4	0	0	4	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0016	8574	3	1	1	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/1	t0017	8578	3	0	1	0	1	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0018	8578	3	0	0	3	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0019	8572	3	3	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0020	8578	3	3	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0021	8582	3	0	1	2	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0022	8582	3	0	0	3	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0023	8582	3	0	3	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0024	8576	3	0	0	3	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0025	8578	2	0	2	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0026	8578	2	0	0	0	2	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0027	8578	2	0	0	2	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0028	8582	2	0	1	0	1	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0029	8582	2	0	0	2	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0030	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0031	8578	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0032	8582	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0033	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0034	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456