JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBNL_chr7_44039702_44074456	0/0	t0035	8578	1	0	0	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0036	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0037	8582	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0038	8578	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0039	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0040	8578	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0041	8578	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0042	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0043	8578	1	0	0	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0044	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0045	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0046	8582	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0047	8572	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0048	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0049	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0050	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0051	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0052	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0053	8582	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0054	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0055	8582	1	0	0	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0056	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0057	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0058	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0059	8582	1	0	0	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0060	8582	1	0	1	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0061	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0062	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0063	8577	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0064	8582	1	0	0	0	0	1	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0065	8582	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0066	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0067	8582	1	0	0	1	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBNL_chr7_44039702_44074456	0/0	t0068	8578	1	1	0	0	0	0	copy fasta	DBNL	chr7	44039702	44074456
DBP_chr19_48625030_48642379	1/1	t0001	1193	286	59	68	123	9	25	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0002	1193	72	8	10	42	3	9	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0003	1193	17	16	1	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0004	1193	6	6	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0005	1193	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0006	1193	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0007	1193	1	0	0	1	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0008	1193	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0009	1193	1	0	1	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0010	1193	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBP_chr19_48625030_48642379	0/0	t0011	1193	1	1	0	0	0	0	copy fasta	DBP	chr19	48625030	48642379
DBR1_chr3_138155988_138179921	0/1	t0001	1028	174	40	28	85	4	16	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	1/0	t0002	1028	142	33	15	71	5	17	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0003	1028	28	2	13	5	5	3	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0004	1028	10	8	2	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0005	1028	6	6	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921