JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBR1_chr3_138155988_138179921	0/0	t0006	1028	4	2	2	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0007	1028	3	0	0	3	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0008	1028	1	1	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0009	1028	1	1	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBR1_chr3_138155988_138179921	0/0	t0010	1028	1	1	0	0	0	0	copy fasta	DBR1	chr3	138155988	138179921
DBT_chr1_100181919_100254834	0/0	t0001	9322	27	8	5	12	1	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0002	9322	21	0	3	11	0	7	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/1	t0003	9320	12	0	2	4	2	3	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0004	9322	10	1	7	0	2	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0005	9322	10	0	4	6	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0006	9326	7	7	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0007	9328	7	0	0	4	0	3	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0008	9329	7	0	3	1	1	2	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0009	9343	5	5	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0010	9330	4	3	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0011	9339	4	4	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0012	9323	4	3	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0013	9324	4	3	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0014	9326	3	3	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0015	9335	3	3	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0016	9321	3	0	2	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0017	9321	3	0	3	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0018	9322	3	3	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0019	9323	3	3	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0020	9333	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0021	9323	2	0	2	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0022	9334	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0023	9324	2	0	0	2	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0024	9347	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0025	9329	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0026	9331	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0027	9337	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0028	9343	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0029	9318	2	0	1	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0030	9322	2	0	0	0	0	2	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0031	9324	2	0	0	2	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0032	9333	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0033	9329	2	2	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0034	9328	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0035	9333	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0036	9329	1	0	0	0	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0037	9333	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0038	9323	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0039	9327	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0040	9347	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0041	9326	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0042	9327	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0043	9328	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0044	9333	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0045	9339	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834