JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBT_chr1_100181919_100254834	0/0	t0046	9344	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0047	9350	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	1/0	t0048	9351	1	0	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0049	9316	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0050	9323	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0051	9323	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0052	9322	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0053	9322	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0054	9322	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0055	9321	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0056	9322	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0057	9323	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0058	9322	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0059	9322	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0060	9323	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0061	9322	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0062	9320	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0063	9324	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0064	9322	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0065	9324	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0066	9324	1	0	0	0	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0067	9327	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0068	9326	1	0	0	0	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0069	9328	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0070	9326	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0071	9327	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0072	9320	1	0	0	0	0	1	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0073	9331	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0074	9320	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0075	9334	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0076	9327	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0077	9329	1	0	0	0	1	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0078	9331	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0079	9331	1	0	1	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0080	9332	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0081	9333	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0082	9336	1	0	0	1	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0083	9323	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0084	9340	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0085	9346	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0086	9350	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBT_chr1_100181919_100254834	0/0	t0087	9322	1	1	0	0	0	0	copy fasta	DBT	chr1	100181919	100254834
DBX1_chr11_20151155_20165475	1/1	t0001	211	406	76	68	196	18	46	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	t0002	211	31	15	3	13	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	t0003	211	21	0	6	13	0	2	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	t0004	211	10	0	0	10	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	t0005	211	8	5	3	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX1_chr11_20151155_20165475	0/0	t0006	211	4	4	0	0	0	0	copy fasta	DBX1	chr11	20151155	20165475
DBX2_chr12_45009672_45056099	0/0	t0001	1787	213	43	45	99	5	21	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	1/1	t0002	1787	110	31	18	48	5	6	copy fasta	DBX2	chr12	45009672	45056099