JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DBX2_chr12_45009672_45056099	0/0	t0003	1787	32	0	5	24	0	3	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0004	1787	18	0	0	18	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0005	1787	15	14	1	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0006	1787	6	0	0	6	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0007	1787	4	0	4	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0008	1787	3	3	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0009	1787	3	3	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0010	1787	2	0	2	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0011	1787	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0012	1787	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0013	1787	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0014	1787	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0015	1787	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0016	1787	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0017	1787	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0018	1787	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0019	1787	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	t0020	1787	1	0	1	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DCAF10_chr9_37795797_37872664	1/1	t0001	6227	108	19	24	50	3	10	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0002	6226	51	5	9	25	2	10	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0003	6227	40	2	13	16	1	8	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0004	6227	27	10	4	7	2	4	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0005	6242	11	1	2	6	1	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0006	6227	9	1	3	4	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0007	6226	8	1	0	7	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0008	6225	7	7	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0009	6243	6	0	0	5	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0010	6228	5	1	0	3	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0011	6227	5	0	0	5	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0012	6228	4	4	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0013	6227	4	0	4	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0014	6222	4	4	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0015	6230	4	3	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0016	6227	3	0	2	0	1	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0017	6226	3	0	0	2	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0018	6225	2	2	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0019	6232	2	2	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0020	6232	2	2	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0021	6232	2	1	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0022	6227	2	2	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0023	6228	2	0	1	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0024	6227	2	0	0	0	1	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0025	6227	2	2	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0026	6227	2	0	2	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0027	6244	2	0	0	2	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0028	6242	2	0	2	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0029	6227	1	0	0	0	1	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0030	6245	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0031	6231	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0032	6232	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664