JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF10_chr9_37795797_37872664	0/0	t0033	6228	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0034	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0035	6228	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0036	6228	1	0	0	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0037	6228	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0038	6228	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0039	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0040	6227	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0041	6227	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0042	6228	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0043	6227	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0044	6227	1	0	0	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0045	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0046	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0047	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0048	6228	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0049	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0050	6226	1	0	0	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0051	6226	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0052	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0053	6226	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0054	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0055	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0056	6226	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0057	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0058	6227	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0059	6245	1	0	0	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0060	6243	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0061	6243	1	0	0	0	0	1	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0062	6234	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	t0063	6230	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF11_chr14_24109777_24130242	0/1	t0001	2664	205	25	35	115	7	22	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	1/0	t0002	2664	123	19	22	59	7	15	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0003	2664	24	17	4	0	0	3	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0004	2664	15	0	0	15	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0005	2664	14	12	2	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0006	2664	10	9	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0007	2664	5	5	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0008	2664	4	0	0	4	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0009	2664	2	0	2	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0010	2664	2	2	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0011	2664	2	2	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0012	2664	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0013	2664	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0014	2664	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0015	2664	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0016	2664	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0017	2664	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0018	2664	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0019	2664	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242