JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF11_chr14_24109777_24130242	0/0	t0020	2664	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	t0021	2664	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF12L1_chrX_126544383_126557814	1/1	t0001	1954	261	72	46	106	9	26	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0002	1954	10	2	3	2	2	1	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0003	1954	2	2	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0004	1957	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0005	1955	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0006	1952	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0007	1954	1	1	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0008	1954	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0009	1953	1	1	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0010	1955	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0011	1954	1	0	1	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0012	1953	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0013	1954	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	t0014	1954	1	0	0	0	0	1	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L2_chrX_126158499_126171289	1/1	t0001	1400	130	16	28	62	7	15	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0002	1400	122	33	24	56	3	6	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0003	1403	38	10	1	21	2	4	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0004	1406	6	5	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0005	1403	6	6	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0006	1394	5	5	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0007	1394	2	0	0	0	0	2	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0008	1399	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0009	1404	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0010	1400	1	0	0	0	1	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0011	1400	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0012	1400	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0013	1397	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0014	1391	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0015	1388	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0016	1401	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0017	1391	1	0	1	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	t0018	1406	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12_chr9_34081387_34131698	0/1	t0001	2236	136	26	31	45	12	21	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0002	2236	113	33	20	48	3	9	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	1/0	t0003	2231	48	7	7	29	0	4	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0004	2236	35	21	10	0	1	3	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0005	2236	8	0	4	0	0	4	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0006	2236	5	0	3	2	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0007	2231	4	1	2	0	0	1	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0008	2233	4	4	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0009	2236	3	1	0	0	2	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0010	2236	3	0	0	3	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0011	2236	2	0	0	0	0	2	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0012	2231	1	1	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0013	2231	1	0	1	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0014	2236	1	1	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0015	2236	1	0	1	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0016	2236	1	0	0	0	0	1	copy fasta	DCAF12	chr9	34081387	34131698