JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF12_chr9_34081387_34131698	0/0	t0017	2236	1	0	0	0	0	1	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0018	2236	1	1	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0019	2236	1	0	1	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	t0020	2231	1	0	0	1	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF13_chr8_103410386_103448453	1/1	t0001	633	338	92	65	131	16	32	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	t0002	633	2	0	2	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	t0003	633	1	0	0	1	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	t0004	633	1	0	1	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF15_chr19_13947509_13966449	1/1	t0001	459	353	57	70	163	16	45	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0002	460	26	24	1	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0003	459	15	14	1	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0004	459	2	0	0	0	0	2	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0005	459	2	2	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0006	444	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	t0007	460	1	1	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF16_chr4_17795655_17815757	1/0	t0001	3897	81	26	18	23	3	10	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0002	3898	76	10	8	44	2	12	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0003	3896	41	0	0	41	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0004	3897	34	6	6	16	0	6	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0005	3898	26	4	0	17	0	5	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0006	3898	17	0	8	3	2	4	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0007	3899	16	0	0	16	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0008	3897	15	0	9	6	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0009	3894	10	10	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0010	3899	8	8	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/1	t0011	3899	8	0	6	0	0	1	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0012	3898	8	0	1	6	0	1	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0013	3899	7	0	4	3	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0014	3896	6	0	0	6	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0015	3899	6	6	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0016	3897	5	0	0	5	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0017	3897	5	0	0	5	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0018	3900	5	0	3	0	0	2	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0019	3897	4	0	3	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0020	3898	4	4	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0021	3899	3	0	0	3	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0022	3896	3	1	2	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0023	3898	2	0	0	2	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0024	3898	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0025	3898	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0026	3899	2	1	0	0	1	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0027	3899	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0028	3898	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0029	3894	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0030	3898	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0031	3898	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0032	3896	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0033	3897	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0034	3900	1	0	0	0	0	1	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0035	3896	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757