JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF16_chr4_17795655_17815757	0/0	t0036	3899	1	0	0	0	0	1	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0037	3898	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0038	3898	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0039	3897	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0040	3899	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0041	3899	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0042	3899	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0043	3900	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0044	3900	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0045	3899	1	0	0	0	0	1	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0046	3900	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0047	3897	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0048	3897	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0049	3897	1	0	1	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0050	3895	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0051	3894	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	t0052	3900	1	1	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF17_chr2_171429226_171490052	0/0	t0001	4291	188	29	41	90	11	17	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0002	4291	89	13	14	52	1	9	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0003	4291	18	3	1	11	0	3	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0004	4291	13	13	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	1/0	t0005	4291	10	9	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0006	4291	9	9	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0007	4291	7	5	2	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0008	4291	3	0	0	3	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0009	4291	2	0	0	1	0	1	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0010	4291	2	2	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0011	4291	2	0	0	2	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0012	4291	2	2	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0013	4291	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/1	t0014	4291	1	0	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0015	4291	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0016	4291	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0017	4291	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0018	4291	1	0	0	0	0	1	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0019	4291	1	0	1	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0020	4291	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0021	4291	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0022	4291	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0023	4291	1	0	1	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0024	4291	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0025	4291	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0026	4291	1	0	0	0	0	1	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	t0027	4291	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF1_chr3_51392842_51505015	1/1	t0001	1126	261	54	48	128	3	26	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0002	1126	3	0	0	3	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0003	1126	2	0	0	0	2	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0004	1126	2	1	1	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0005	1126	1	1	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0006	1126	1	0	0	0	1	0	copy fasta	DCAF1	chr3	51392842	51505015