JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF1_chr3_51392842_51505015	0/0	t0007	1126	1	0	1	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0008	1126	1	1	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0009	1126	1	1	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	t0010	1126	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF4L1_chr4_41976756_41991465	0/0	t0001	3522	134	11	28	67	6	22	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0002	3520	68	47	8	3	1	9	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0003	3524	10	0	8	0	1	1	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0004	3531	10	10	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0005	3522	9	0	5	0	1	3	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	1/0	t0006	3520	8	4	1	2	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/1	t0007	3522	7	0	5	0	1	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0008	3523	7	0	1	4	0	2	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0009	3522	5	0	0	5	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0010	3524	5	1	1	2	0	1	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0011	3520	3	3	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0012	3521	3	0	0	3	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0013	3520	3	3	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0014	3531	3	3	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0015	3522	3	0	3	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0016	3522	3	0	0	3	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0017	3520	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0018	3520	2	1	1	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0019	3520	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0020	3527	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0021	3521	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0022	3526	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0023	3521	2	0	0	2	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0024	3522	2	0	0	2	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0025	3521	2	2	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0026	3522	2	0	0	2	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0027	3520	1	0	1	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0028	3521	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0029	3520	1	1	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0030	3521	1	1	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0031	3522	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0032	3521	1	1	0	0	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0033	3525	1	0	0	0	0	1	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0034	3525	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0035	3521	1	0	0	0	0	1	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0036	3519	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0037	3522	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0038	3522	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	t0039	3523	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L2_chr8_87865747_87879015	1/0	t0001	2082	167	29	28	93	2	14	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0002	2081	76	3	13	55	2	3	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0003	2080	42	0	3	35	1	3	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0004	2081	39	6	11	3	5	14	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0005	2077	36	25	6	3	2	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/1	t0006	2077	21	1	4	9	2	4	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0007	2080	13	10	2	1	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015