JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF4L2_chr8_87865747_87879015	0/0	t0008	2082	9	2	3	3	0	1	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0009	2080	5	4	1	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0010	2080	4	4	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0011	2081	2	0	0	0	0	2	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0012	2081	2	2	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0013	2111	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0014	2077	1	0	0	0	0	1	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0015	2081	1	0	0	1	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0016	2108	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0017	2077	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0018	2108	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0019	2077	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0020	2081	1	0	0	0	1	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0021	2081	1	0	1	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0022	2081	1	0	0	0	1	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0023	2082	1	0	0	1	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0024	2080	1	0	0	1	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0025	2077	1	0	0	1	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	t0026	2077	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4_chr14_72921464_72964703	1/1	t0001	987	104	24	17	41	6	14	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0002	987	95	2	20	63	2	8	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0003	987	55	2	5	37	1	10	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0004	987	42	37	5	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0005	987	28	2	13	6	1	6	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0006	987	27	4	4	19	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0007	987	18	1	3	12	0	2	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0008	987	13	12	0	1	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0009	987	8	1	1	6	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0010	987	2	2	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0011	987	2	2	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0012	987	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	t0013	987	1	0	0	1	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF5_chr14_69045881_69158119	1/0	t0001	3118	90	27	25	7	9	21	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0002	3117	70	35	15	16	2	2	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/1	t0003	3116	41	1	10	15	1	13	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0004	3118	13	9	3	0	0	1	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0005	3117	4	4	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0006	3118	4	4	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0007	3117	3	2	1	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0008	3116	3	0	2	0	1	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0009	3117	2	0	0	2	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0010	3118	2	2	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0011	3129	2	2	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0012	3118	1	0	0	0	0	1	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0013	3117	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0014	3117	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0015	3117	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0016	3117	1	0	0	1	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0017	3117	1	0	0	0	1	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0018	3117	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119