JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF5_chr14_69045881_69158119	0/0	t0019	3117	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0020	3118	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	t0021	3116	1	0	0	1	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF6_chr1_167931683_168080836	1/1	t0001	631	231	65	42	94	9	19	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	t0002	631	31	23	5	0	2	1	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	t0003	631	2	0	0	2	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	t0004	631	1	0	1	0	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	t0005	631	1	0	0	0	1	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF7_chr17_63545477_63599266	1/0	t0001	5296	195	38	40	76	11	29	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0002	5296	8	7	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0003	5296	6	6	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0004	5296	6	6	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0005	5296	5	4	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0006	5297	3	2	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/1	t0007	5297	3	0	1	0	1	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0008	5296	2	1	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0009	5295	2	1	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0010	5296	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0011	5296	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0012	5296	2	0	0	0	0	2	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0013	5296	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0014	5297	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0015	5297	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0016	5295	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0017	5297	2	2	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0018	5296	2	0	2	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0019	5295	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0020	5296	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0021	5297	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0022	5296	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0023	5297	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0024	5296	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0025	5296	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0026	5296	1	0	0	0	0	1	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0027	5296	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0028	5296	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0029	5295	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0030	5296	1	0	0	0	1	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0031	5297	1	0	0	0	1	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	t0032	5296	1	1	0	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF8L1_chrX_27972992_27986449	1/1	t0001	1656	193	27	42	89	10	23	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0002	1657	47	24	5	12	2	4	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0003	1656	25	14	5	6	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0004	1657	8	8	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0005	1656	2	0	1	0	1	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0006	1657	2	2	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0007	1656	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0008	1656	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0009	1656	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0010	1656	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449