JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAF8L1_chrX_27972992_27986449	0/0	t0011	1656	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0012	1656	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0013	1656	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0014	1656	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0015	1656	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0016	1656	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0017	1658	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0018	1657	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	t0019	1657	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L2_chrX_27585344_27754942	1/1	t0001	1590	178	33	48	71	9	15	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0002	1590	56	13	5	35	0	3	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0003	1590	19	18	1	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0004	1590	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0005	1590	2	1	1	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0006	1590	1	0	0	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0007	1590	1	0	0	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0008	1590	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0009	1590	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	t0010	1590	1	1	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8_chr1_160210720_160267549	0/1	t0001	2074	274	52	58	125	12	26	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0002	2074	22	22	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	1/0	t0003	2074	10	1	4	0	0	4	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0004	2074	9	3	1	5	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0005	2074	7	7	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0006	2074	4	0	0	4	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0007	2074	2	2	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0008	2074	2	0	0	2	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0009	2074	1	0	0	1	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0010	2074	1	0	1	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0011	2074	1	0	0	1	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0012	2074	1	1	0	0	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0013	2074	1	0	0	1	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAF8_chr1_160210720_160267549	0/0	t0014	2074	1	0	0	1	0	0	copy fasta	DCAF8	chr1	160210720	160267549
DCAKD_chr17_45018344_45056632	0/0	t0001	1467	43	7	9	18	4	5	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0002	1462	31	0	6	24	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0003	1455	29	0	15	4	4	6	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0004	1466	26	14	4	1	2	5	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0005	1466	23	3	5	11	1	3	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0006	1464	20	10	1	6	1	2	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0007	1468	19	0	3	15	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0008	1472	17	0	0	16	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0009	1465	16	2	1	10	1	2	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/1	t0010	1469	14	2	6	4	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0011	1470	11	0	2	8	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0012	1465	10	1	2	5	0	2	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0013	1453	9	7	2	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0014	1440	8	8	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0015	1471	7	2	2	2	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0016	1466	7	1	1	4	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0017	1466	6	0	6	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632