JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAKD_chr17_45018344_45056632	0/0	t0018	1464	6	1	1	1	0	3	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0019	1452	6	5	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0020	1465	5	1	3	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0021	1463	5	2	2	0	1	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0022	1467	5	2	1	1	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0023	1467	4	4	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0024	1461	4	1	1	2	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0025	1474	3	0	0	3	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0026	1470	3	0	0	3	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0027	1455	3	3	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0028	1470	3	0	0	0	0	3	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0029	1468	3	1	1	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0030	1467	3	0	1	1	1	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0031	1468	3	0	1	1	1	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0032	1462	3	3	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0033	1476	2	0	0	2	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0034	1475	2	0	1	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0035	1467	2	0	0	2	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0036	1468	2	0	0	1	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0037	1464	2	0	1	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0038	1454	2	2	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0039	1469	2	0	1	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0040	1464	2	0	0	1	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0041	1463	2	1	1	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0042	1465	2	0	0	2	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0043	1439	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0044	1471	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0045	1473	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0046	1467	1	0	1	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0047	1470	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0048	1468	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0049	1468	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0050	1465	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0051	1467	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0052	1465	1	0	0	0	1	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0053	1463	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0054	1461	1	0	1	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0055	1453	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	1/0	t0056	1476	1	0	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0057	1476	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0058	1476	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0059	1465	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0060	1476	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0061	1471	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0062	1471	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0063	1468	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0064	1469	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0065	1470	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0066	1465	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0067	1469	1	0	0	0	1	0	copy fasta	DCAKD	chr17	45018344	45056632