JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCAKD_chr17_45018344_45056632	0/0	t0068	1466	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0069	1464	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0070	1462	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0071	1457	1	1	0	0	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0072	1455	1	0	0	0	0	1	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0073	1454	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0074	1499	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCAKD_chr17_45018344_45056632	0/0	t0075	1468	1	0	0	1	0	0	copy fasta	DCAKD	chr17	45018344	45056632
DCANP1_chr5_135439214_135452348	0/1	t0001	2401	205	33	42	97	6	26	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0002	2401	94	2	26	54	2	10	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0003	2401	61	19	12	23	3	4	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0004	2401	21	1	0	15	2	3	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0005	2401	14	1	1	10	0	2	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0006	2401	8	8	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0007	2401	8	6	1	0	0	1	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0008	2401	6	6	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0009	2401	4	4	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0010	2401	4	2	0	0	0	2	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0011	2401	2	2	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	1/0	t0012	2401	2	0	1	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0013	2401	2	1	1	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0014	2401	2	0	0	2	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0015	2401	2	2	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0016	2401	2	2	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0017	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0018	2401	1	0	0	0	1	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0019	2410	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0020	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0021	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0022	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0023	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0024	2401	1	0	0	0	0	1	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0025	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0026	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0027	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0028	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0029	2401	1	0	0	0	0	1	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0030	2378	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0031	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0032	2401	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0033	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0034	2401	1	1	0	0	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCANP1_chr5_135439214_135452348	0/0	t0035	1640	1	0	0	1	0	0	copy fasta	DCANP1	chr5	135439214	135452348
DCBLD1_chr6_117477674_117554797	0/1	t0001	1467	227	62	40	92	4	28	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	1/0	t0002	1467	129	19	23	72	6	8	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0003	1467	4	4	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0004	1467	2	0	1	0	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0005	1467	2	2	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0006	1467	2	0	0	2	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0007	1467	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797