JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCBLD1_chr6_117477674_117554797	0/0	t0008	1467	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0009	1467	1	1	0	0	0	0	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD1_chr6_117477674_117554797	0/0	t0010	1467	1	0	0	0	0	1	copy fasta	DCBLD1	chr6	117477674	117554797
DCBLD2_chr3_98790941_98906695	0/0	t0001	3804	106	8	22	56	2	18	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0002	3802	39	0	10	23	2	4	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0003	3801	34	8	5	8	2	11	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0004	3802	25	17	4	1	1	2	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/1	t0005	3802	14	0	5	2	3	3	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0006	3803	10	2	5	0	2	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0007	3801	10	3	0	3	1	3	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0008	3801	9	7	2	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	1/0	t0009	3801	8	7	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0010	3800	6	6	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0011	3803	6	1	1	2	0	2	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0012	3802	5	0	0	5	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0013	3801	5	5	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0014	3801	5	0	0	5	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0015	3804	4	0	0	4	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0016	3802	4	4	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0017	3803	3	0	0	3	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0018	3803	3	3	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0019	3801	3	3	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0020	3802	2	0	0	2	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0021	3805	2	0	0	1	0	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0022	3803	2	0	0	2	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0023	3802	2	0	0	0	2	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0024	3799	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0025	3801	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0026	3803	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0027	3804	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0028	3803	1	0	0	0	0	1	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0029	3801	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0030	3803	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0031	3802	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0032	3801	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0033	3801	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0034	3804	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0035	3803	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0036	3804	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0037	3802	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0038	3803	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0039	3803	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0040	3804	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0041	3802	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0042	3805	1	0	1	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0043	3802	1	1	0	0	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0044	3801	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0045	3801	1	0	0	0	1	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCBLD2_chr3_98790941_98906695	0/0	t0046	3802	1	0	0	1	0	0	copy fasta	DCBLD2	chr3	98790941	98906695
DCC_chr18_52335197_53540899	0/0	t0001	5837	20	7	6	3	1	3	copy fasta	DCC	chr18	52335197	53540899