JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCC_chr18_52335197_53540899	0/0	t0002	5836	13	3	2	4	1	3	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0003	5838	13	2	9	0	2	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0004	5838	8	1	2	3	0	2	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0005	5838	6	2	0	4	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0006	5836	5	5	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0007	5838	4	3	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0008	5837	4	4	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0009	5836	4	3	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0010	5837	3	3	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0011	5837	3	3	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0012	5838	2	0	0	0	0	2	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0013	5838	2	2	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0014	5838	2	1	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0015	5836	2	1	0	0	1	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0016	5838	2	1	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0017	5838	1	0	0	0	0	1	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0018	5839	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0019	5839	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0020	5838	1	0	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0021	5838	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0022	5838	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0023	5837	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0024	5838	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0025	5838	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0026	5837	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0027	5837	1	0	0	0	0	1	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0028	5838	1	0	0	0	1	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0029	5839	1	0	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0030	5839	1	0	1	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0031	5838	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0032	5838	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0033	5837	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0034	5837	1	0	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0035	5836	1	0	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0036	5837	1	0	0	1	0	0	copy fasta	DCC	chr18	52335197	53540899
DCC_chr18_52335197_53540899	0/0	t0037	5837	1	1	0	0	0	0	copy fasta	DCC	chr18	52335197	53540899
DCDC1_chr11_30858603_31374739	0/1	t0001	1939	69	19	17	18	2	12	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	1/0	t0002	1938	69	33	12	17	2	4	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0003	1938	5	5	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0004	1938	3	2	1	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0005	1938	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0006	1939	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0007	1939	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0008	1939	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0009	1938	1	0	0	1	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC1_chr11_30858603_31374739	0/0	t0010	1938	1	1	0	0	0	0	copy fasta	DCDC1	chr11	30858603	31374739
DCDC2B_chr1_32204089_32221192	1/1	t0001	301	404	94	66	188	14	40	copy fasta	DCDC2B	chr1	32204089	32221192
DCDC2C_chr2_3698575_3853008	1/0	t0001	1003	90	34	11	38	1	5	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0002	1003	57	17	12	19	1	8	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0003	1003	50	1	4	42	1	2	copy fasta	DCDC2C	chr2	3698575	3853008