JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCDC2C_chr2_3698575_3853008	0/0	t0004	1003	37	6	8	17	3	3	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0005	1003	21	5	5	5	0	6	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0006	1003	14	1	4	8	0	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0007	1003	12	1	9	0	1	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0008	1014	8	7	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/1	t0009	1003	6	0	3	0	2	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0010	1003	5	5	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0011	1014	3	3	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0012	1003	3	0	2	0	0	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0013	1014	2	2	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0014	1003	2	0	0	0	1	1	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0015	1003	2	0	2	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0016	992	2	2	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0017	1014	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0018	1014	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0019	1014	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0020	1014	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0021	1003	1	0	0	1	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0022	1003	1	0	1	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0023	1027	1	0	0	1	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0024	1003	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0025	992	1	1	0	0	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2C_chr2_3698575_3853008	0/0	t0026	981	1	0	0	1	0	0	copy fasta	DCDC2C	chr2	3698575	3853008
DCDC2_chr6_24166755_24363059	0/0	t0001	3285	35	10	11	9	0	5	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0002	3284	22	19	3	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0003	3285	22	0	4	13	0	5	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0004	3285	18	7	6	2	0	3	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0005	3285	18	16	2	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0006	3306	16	1	2	13	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0007	3285	8	0	1	4	1	2	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0008	3306	8	0	0	8	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0009	3309	6	0	2	2	0	2	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0010	3309	6	1	0	4	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0011	3288	5	1	2	1	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0012	3285	4	4	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0013	3291	4	2	2	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0014	3285	3	1	0	0	0	2	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0015	3285	3	0	1	0	0	2	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0016	3285	3	1	1	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0017	3288	2	0	0	1	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0018	3312	2	0	1	0	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0019	3303	2	0	0	1	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0020	3300	2	2	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0021	3291	2	1	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0022	3300	2	2	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0023	3285	2	0	1	0	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0024	3312	2	0	0	1	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0025	3303	2	0	0	1	0	1	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0026	3300	2	0	1	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0027	3306	1	0	0	0	0	1	copy fasta	DCDC2	chr6	24166755	24363059