JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCDC2_chr6_24166755_24363059	0/0	t0028	3285	1	0	0	0	1	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0029	3284	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0030	3291	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0031	3285	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0032	3285	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0033	3285	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0034	3285	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0035	3309	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0036	3306	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0037	3285	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0038	3285	1	1	0	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0039	3285	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0040	3291	1	0	0	1	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCDC2_chr6_24166755_24363059	0/0	t0041	3288	1	0	1	0	0	0	copy fasta	DCDC2	chr6	24166755	24363059
DCD_chr12_54639589_54653365	1/0	t0001	187	288	48	49	151	8	31	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0002	186	74	15	15	31	4	9	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0003	189	19	16	1	2	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/1	t0004	186	14	5	2	5	1	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0005	188	14	5	1	7	1	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0006	187	9	2	3	0	0	4	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0007	186	8	8	0	0	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0008	188	1	0	1	0	0	0	copy fasta	DCD	chr12	54639589	54653365
DCD_chr12_54639589_54653365	0/0	t0009	187	1	1	0	0	0	0	copy fasta	DCD	chr12	54639589	54653365
DCHS1_chr11_6616330_6660809	0/0	t0001	817	255	62	58	110	6	19	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	1/1	t0002	817	90	24	12	30	3	19	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0003	817	12	3	4	0	1	4	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0004	817	3	0	0	0	0	3	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0005	814	2	2	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0006	817	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0007	817	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0008	817	1	0	0	0	0	1	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0009	817	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0010	817	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0011	817	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0012	817	1	0	0	1	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0013	817	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0014	814	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0015	817	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0016	817	1	1	0	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS1_chr11_6616330_6660809	0/0	t0017	817	1	0	1	0	0	0	copy fasta	DCHS1	chr11	6616330	6660809
DCHS2_chr4_154226742_154496799	1/1	t0001	3239	78	19	19	22	2	14	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0002	3239	15	6	4	5	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0003	3240	11	3	0	7	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0004	3239	10	2	5	2	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0005	3239	7	7	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0006	3239	7	6	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0007	3240	7	6	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0008	3239	6	0	6	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0009	3240	6	5	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0010	3239	4	0	1	0	2	1	copy fasta	DCHS2	chr4	154226742	154496799