JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCHS2_chr4_154226742_154496799	0/0	t0011	3239	3	3	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0012	3239	3	3	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0013	3239	3	0	0	3	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0014	3240	2	0	0	2	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0015	3240	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0016	3239	2	0	0	0	0	2	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0017	3239	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0018	3239	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0019	3239	2	2	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0020	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0021	3239	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0022	3239	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0023	3240	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0024	3240	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0025	3240	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0026	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0027	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0028	3239	1	0	1	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0029	3239	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0030	3239	1	0	0	0	0	1	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0031	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0032	3242	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0033	3242	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0034	3239	1	0	0	1	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0035	3240	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0036	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0037	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0038	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCHS2_chr4_154226742_154496799	0/0	t0039	3239	1	1	0	0	0	0	copy fasta	DCHS2	chr4	154226742	154496799
DCK_chr4_70988649_71035914	0/0	t0001	1724	189	30	45	76	9	29	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	1/0	t0002	1724	48	26	5	11	3	2	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0003	1724	12	10	0	0	0	2	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0004	1722	9	9	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0005	1724	4	4	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0006	1724	3	3	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/1	t0007	1724	3	0	2	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0008	1724	2	2	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0009	1724	2	2	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0010	1724	1	1	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0011	1724	1	0	1	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0012	1724	1	0	0	0	0	1	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0013	1724	1	0	1	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0014	1724	1	1	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0015	1724	1	0	1	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0016	1724	1	0	0	1	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0017	1724	1	1	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0018	1724	1	0	1	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCK_chr4_70988649_71035914	0/0	t0019	1724	1	1	0	0	0	0	copy fasta	DCK	chr4	70988649	71035914
DCLK1_chr13_35763652_36136382	0/0	t0001	6172	41	2	10	22	3	4	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0002	6172	37	3	16	11	1	6	copy fasta	DCLK1	chr13	35763652	36136382