JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLK1_chr13_35763652_36136382	0/0	t0003	6170	22	1	3	14	0	4	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0004	6171	12	0	1	6	1	4	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0005	6170	11	4	1	3	3	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0006	6170	9	7	2	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0007	6172	9	1	1	3	2	2	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0008	6172	9	2	1	3	0	3	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0009	6174	7	7	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/1	t0010	6172	6	0	4	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0011	6173	5	4	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0012	6172	4	4	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0013	6172	4	3	0	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0014	6175	4	2	1	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0015	6172	3	3	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0016	6171	3	0	1	1	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0017	6172	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0018	6172	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0019	6170	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0020	6171	2	0	0	0	2	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0021	6172	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0022	6172	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0023	6172	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0024	6170	2	2	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0025	6175	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0026	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0027	6172	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0028	6170	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0029	6170	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0030	6170	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0031	6170	1	0	0	0	1	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0032	6170	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0033	6171	1	0	0	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0034	6171	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0035	6170	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0036	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0037	6174	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0038	6174	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0039	6174	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0040	6171	1	0	0	0	1	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0041	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0042	6170	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0043	6172	1	0	0	1	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	1/0	t0044	6172	1	0	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0045	6172	1	0	0	0	0	1	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0046	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0047	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0048	6174	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0049	6173	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0050	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0051	6174	1	0	1	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382
DCLK1_chr13_35763652_36136382	0/0	t0052	6172	1	1	0	0	0	0	copy fasta	DCLK1	chr13	35763652	36136382