JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLK2_chr4_150073445_150262438	0/0	t0001	1775	33	12	3	13	2	3	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0002	1771	22	9	5	5	0	3	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/1	t0003	1771	19	6	5	1	0	6	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0004	1775	8	1	0	7	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0005	1775	6	6	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	1/0	t0006	1775	5	2	1	1	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0007	1786	5	5	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0008	1775	2	2	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0009	1775	2	0	2	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0010	1764	2	0	1	0	0	1	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0011	1771	1	0	0	0	0	1	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0012	1775	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0013	1771	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0014	1775	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0015	1786	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0016	1782	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0017	1786	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0018	1775	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0019	1775	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0020	1771	1	0	0	1	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0021	1771	1	0	1	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK2_chr4_150073445_150262438	0/0	t0022	1771	1	1	0	0	0	0	copy fasta	DCLK2	chr4	150073445	150262438
DCLK3_chr3_36707421_36769553	0/0	t0001	3190	52	1	3	35	3	10	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	1/0	t0002	3198	49	4	10	28	4	2	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/1	t0003	3190	36	2	6	23	0	4	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0004	3190	36	1	10	11	2	12	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0005	3198	35	2	6	20	5	2	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0006	3190	24	0	1	22	0	1	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0007	3190	18	0	6	12	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0008	3190	14	0	3	9	0	2	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0009	3190	13	1	5	5	0	2	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0010	3190	13	10	3	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0011	3190	12	1	2	1	1	7	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0012	3198	9	3	4	2	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0013	3190	8	7	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0014	3198	7	7	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0015	3190	7	6	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0016	3190	7	7	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0017	3190	7	0	2	5	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0018	3190	6	0	0	4	0	2	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0019	3190	6	0	5	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0020	3190	5	1	0	4	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0021	3190	5	5	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0022	3198	4	3	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0023	3190	3	3	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0024	3190	3	0	1	1	0	1	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0025	3190	3	3	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0026	3198	2	0	0	2	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0027	3198	2	0	2	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0028	3190	2	0	0	0	1	1	copy fasta	DCLK3	chr3	36707421	36769553