Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCB11_chr2_168915781_169036324	0/0	t0027	2965	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0028	2965	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0029	2965	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0030	2970	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0031	2969	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0032	2965	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0033	2963	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0034	2970	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0035	2969	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0036	2969	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	t0037	2963	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB1_chr7_87498017_87605884	0/1	t0001	1363	214	51	45	88	8	21	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0002	1363	53	2	9	36	1	5	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0003	1363	17	5	6	2	1	3	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0004	1363	17	12	4	0	1	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0005	1363	12	1	0	10	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0006	1371	8	8	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	1/0	t0007	1363	6	0	3	0	2	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0008	1359	5	5	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0009	1363	3	3	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0010	1363	2	1	0	0	1	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0011	1371	2	0	0	0	0	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0012	1363	2	0	0	2	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0013	1363	2	0	0	1	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0014	1363	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0015	1371	1	0	0	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0016	1359	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0017	1371	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0018	1363	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0019	1363	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0020	1363	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0021	1371	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	t0022	1363	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB4_chr7_87396696_87480680	1/1	t0001	454	288	81	50	118	10	27	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	t0002	454	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	t0003	454	1	0	0	0	0	1	copy fasta	ABCB4	chr7	87396696	87480680
ABCB5_chr7_20610667_20762008	1/1	t0001	1577	197	34	35	91	7	28	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0002	1577	46	2	15	17	4	8	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0003	1577	42	5	9	25	1	2	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0004	1577	33	31	2	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0005	1577	8	7	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0006	1577	7	6	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0007	1577	4	0	1	2	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0008	1577	3	0	0	3	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0009	1577	3	3	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0010	1577	2	0	0	2	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0011	1577	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0012	1577	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0013	1559	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0014	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008