Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADORA2A_chr22_24422599_24447357	0/0	t0009	1291	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2B_chr17_15940130_15980746	1/1	t0001	524	297	64	56	126	14	35	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0002	524	21	17	4	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0003	522	14	3	4	4	0	3	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0004	526	7	7	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0005	522	2	2	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0006	526	2	2	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0007	522	1	0	0	0	0	1	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0008	524	1	1	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	t0009	524	1	0	0	0	0	1	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA3_chr1_111494429_111508633	0/0	t0001	801	183	14	52	89	5	23	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0002	801	155	51	10	80	3	11	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	1/0	t0003	801	105	26	10	49	5	14	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/1	t0004	801	10	3	5	0	1	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0005	801	1	0	1	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0006	801	1	1	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0007	801	1	1	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0008	801	1	1	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	t0009	801	1	1	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADO_chr10_62799720_62813479	0/0	t0001	2948	165	25	22	107	0	11	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	1/1	t0002	2948	141	51	25	40	7	16	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0003	2948	88	3	15	51	5	14	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0004	2948	5	4	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0005	2948	3	2	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0006	2948	2	1	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0007	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0008	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0009	2948	1	0	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0010	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0011	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0012	2948	1	0	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0013	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0014	2948	1	0	1	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0015	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0016	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0017	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0018	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0019	2948	1	0	0	0	0	1	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0020	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0021	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0022	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0023	2948	1	0	0	0	0	1	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0024	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0025	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0026	2948	1	0	0	1	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0027	2948	1	1	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	t0028	2948	1	0	0	0	0	1	copy fasta	ADO	chr10	62799720	62813479
ADPGK_chr15_72746294_72788758	1/0	t0001	1115	243	63	36	120	7	16	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/1	t0002	1115	115	26	19	49	6	14	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	t0003	1115	5	0	5	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758