JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLK3_chr3_36707421_36769553	0/0	t0029	3198	2	2	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0030	3198	2	2	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0031	3190	2	1	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0032	3190	2	1	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0033	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0034	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0035	3190	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0036	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0037	3198	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0038	3198	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0039	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0040	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0041	3190	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0042	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0043	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0044	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0045	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0046	3198	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0047	3190	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0048	3198	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0049	3198	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0050	3198	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0051	3198	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0052	3198	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0053	3190	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0054	3190	1	1	0	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0055	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0056	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0057	3190	1	0	1	0	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLK3_chr3_36707421_36769553	0/0	t0058	3190	1	0	0	1	0	0	copy fasta	DCLK3	chr3	36707421	36769553
DCLRE1A_chr10_113829725_113859082	0/1	t0001	1328	242	31	52	116	14	28	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	1/0	t0002	1328	125	37	13	61	2	11	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0003	1329	9	9	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0004	1329	6	3	2	0	0	1	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0005	1328	4	4	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0006	1328	3	0	3	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0007	1329	3	3	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0008	1328	2	0	2	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0009	1328	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0010	1328	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0011	1328	1	0	0	1	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0012	1328	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0013	1328	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1A_chr10_113829725_113859082	0/0	t0014	1328	1	1	0	0	0	0	copy fasta	DCLRE1A	chr10	113829725	113859082
DCLRE1B_chr1_113900326_113919086	1/1	t0001	2157	285	40	49	145	12	37	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0002	2156	69	5	11	44	2	7	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0003	2157	26	19	5	1	0	1	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0004	2157	7	0	6	0	0	1	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0005	2157	7	1	0	6	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0006	2156	7	6	1	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086