JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLRE1B_chr1_113900326_113919086	0/0	t0007	2157	4	3	1	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0008	2157	4	0	0	4	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0009	2157	4	4	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0010	2157	4	0	4	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0011	2157	3	0	0	3	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0012	2157	2	2	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0013	2157	2	0	0	2	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0014	2157	2	2	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0015	2156	2	0	0	2	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0016	2157	2	2	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0017	2157	2	0	0	0	2	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0018	2157	2	0	0	0	0	2	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0019	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0020	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0021	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0022	2156	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0023	2157	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0024	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0025	2156	1	0	1	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0026	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0027	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0028	2157	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0029	2157	1	0	0	1	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1B_chr1_113900326_113919086	0/0	t0030	2157	1	1	0	0	0	0	copy fasta	DCLRE1B	chr1	113900326	113919086
DCLRE1C_chr10_14899613_14959096	0/1	t0001	3881	117	6	24	64	7	15	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0002	3890	29	7	2	14	2	4	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0003	3890	20	0	0	20	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0004	3889	17	2	2	10	0	3	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0005	3879	15	2	7	1	1	4	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	1/0	t0006	3882	12	1	6	3	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0007	3881	12	10	2	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0008	3891	9	2	1	4	0	2	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0009	3890	9	3	1	3	0	2	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0010	3891	7	0	0	6	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0011	3891	7	0	0	7	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0012	3880	7	3	1	2	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0013	3881	6	6	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0014	3880	6	0	1	1	0	4	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0015	3890	5	0	4	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0016	3890	5	4	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0017	3891	4	1	0	0	0	3	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0018	3882	4	0	1	3	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0019	3881	4	4	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0020	3891	3	2	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0021	3889	3	3	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0022	3889	3	0	0	3	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0023	3888	3	3	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0024	3885	3	3	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0025	3871	3	0	2	0	1	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0026	3879	3	0	3	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096