JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLRE1C_chr10_14899613_14959096	0/0	t0027	3892	2	0	0	2	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0028	3891	2	1	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0029	3891	2	0	2	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0030	3890	2	2	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0031	3889	2	2	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0032	3891	2	0	0	2	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0033	3890	2	0	0	2	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0034	3881	2	2	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0035	3881	2	0	0	2	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0036	3881	2	0	2	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0037	3881	2	2	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0038	3881	2	2	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0039	3871	2	0	0	2	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0040	3879	2	0	2	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0041	3891	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0042	3890	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0043	3893	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0044	3893	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0045	3893	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0046	3892	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0047	3892	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0048	3892	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0049	3891	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0050	3891	1	0	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0051	3891	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0052	3890	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0053	3889	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0054	3892	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0055	3891	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0056	3889	1	0	0	0	1	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0057	3889	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0058	3888	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0059	3888	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0060	3890	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0061	3890	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0062	3879	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0063	3889	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0064	3888	1	0	1	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0065	3888	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0066	3885	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0067	3883	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0068	3882	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0069	3884	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0070	3883	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0071	3883	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0072	3883	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0073	3882	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0074	3881	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0075	3881	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0076	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096